Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015943964.1_cds_XP_016486902.1_77695
CDS Infomation

[gene=LOC107807110] [db_xref=GeneID:107807110] [protein=putative pentatricopeptide repeat-containing protein At1g74580 isoform X2] [protein_id=XP_016486902.1] [location=complement(join(30314..30382,31237..33513))] [gbkey=CDS]
Sequence

ATGAGTGCTGCTGTGCTTCCTAAACATGTGGCTGCTGTATTAAAATGTCAAAAGAACCCA
TTAAGGGCACTAGAAATATTCAATTCTGTGAAAAAGGAAGATGGGTTTAACCATAATTTG
TCTACCTATAAATGTATGGTCGAAAAGCTTGGTTGTTATGGGGAGTTCAAGGAAATGGAA
GGCGTCATTGAAGAAGCGAGGCAGAAAATTGATAATATGTTGTTAGAAGGGGTGTACATT
ACTGCTATTAGAAGTTATGGGAAGAAAGGGAAAGTTCAAGAGGCGGTTGACGTGTTTGAG
AAGATGGATTTTTTCAATTGTCAGCCGTCTGTTCATTCGTATAACACGATCATGAATGTA
TTGGTTGAACATGGGTTTTTTAAACAAGCTCATAAGGTTTATATGAGAATGCTGGAAAAG
GGGATTTCTCCTGATGTATATACCTTTACTATTAGGATAAAGTCGTTTTGTAGAACGAAC
CGGCCTCATGTTGCTTTGAGGCTTTTGAATAACATGCCTGATCAAGGATGCGAATTTAAT
GCAGTTGCGTACTGTACAGTAATTGGTGGATTTTATGAAGTGAATTGTCGAGTTGAGGCT
TGTGAATTGTTCGATGAAATGCTTAGGCTCGGAATAACTCCTGATGTTACTACGTTTAAT
AAGCTTATCTGTACACTTTGTAAGAAGGGGGACGTCCAAGAAAGTGAAAGGCTTCTTAAT
AAGATTATGAAAAGAGGAGTGTTTCCAAATCTTTTTACATGTAATGTCTTGATACAAGGT
CTTTCTGAGAGAGGCCAACTAAATGAAGCTGCTAGGATGTTAGGGACTTTGAACAAAGAA
GGTTTAAATGCTGATGTAGTCACTTATAACACTCTTATATGTGGTTTATGCAAGCACTCC
AAGGTTGCTGAAGCTGAGTCTTATTTGCATAAAATGGTGAACGGCGGGTTTGAGCCCGAT
GCATTCACCTATAACACGATCATTGGCGCATATTGCAAATTGGGTATGATACAGAAAGCG
GACAGAATTCTTAATTATGCAGTTTTTAAAGGTTTTGTTCCTGATGAGTTTACTTTGTGC
TCCCTTATTTATGGATTATGCCAGGATGGTGACTTTAACAGAGCCAAGAGTTTATTTAAT
GAAGCCACAGGTAAAGGTATGCAGTGTAATGTAATCCTCTATAATACCTTAATTAAGGGA
ATGTGTCGGCAGGGACTTATCTTAGAAGCATTGAAGTTGATGACTGAAATGCCTGAGAAA
GGTTGCAGGCCTGATACATGGACTTATAATCTGATCATAAATGGTTTGTGCAAGATGGGC
TGTGTATCTGATGCTAGTAATATCCTGAATGTTGCCGTGGCCAAAGGGACCCTTCCTGAT
ATTTTCACCTTCAACACCTTGATTGATGGTTATTGCAAACAGTCGAAATTGGCTGATGCA
ATCGAGATTCTAAATACCATGTGGGATCATGACGTTGTTCCAGATGTGATAACGTATAAC
ACAATGTTGGATGGACTTTGCAAGCTTAAAACTTCTGATGATGTGATGGAAACCTTCAAA
GTCATGGTGGAAAAGGGGTGTGTCCCAAACATAATCACATATAATATTCTCATTGAGAGC
CTTTGTAAATCAAGAAAGTTTATGAAAGCTTTAGACTTACTTGAGGATATTCAAAGCAAG
GGTCTAATTCCTGATACAGTGACTTTTGGCACTTTGATAAATGGGTTTTGTGAGAATGAG
GATTTGGAAGGAGCCTATGAGCTATTCAGAAGAATGAAAACACAATATAATTGCACTCAT
ACTACTGCAACGTACAATATTTTGATTAGTGCATTTGCTAAAAAGCTGAAAATGGACATA
GCAGAGAAGCTATTTCTTGAGATGAGTGAATGTGGCTGTTCTCCTGACAATTACACCTAC
CGTTGTATGATAGATGGTTTCTGCAAGGTAGACAACAGCGAATTGGGGTACAAGTTTTTG
CTTGACAACATGGCGAAAGAGTTTCTTCCATCAAAAGAAACAGCGGGACGAGTGATCAAT
TGCCTATGCGTGAAGAACAGGTTGCTCGAAGCAGTTGGTATCATTCATCTCATGGTGCAG
AAGGGTGTTGTACCTGATGTGGTCCACACAATTTTTGAAGCAGATAAAAAGGATGTGGCA
GCTCCCAAGATCGTTGTGGAAGACTTGCTGAAGAAGGATCATATAACCTATTATGCCTAT
GAACTCTTATACGATGGGATAAGAGACAAAAAGCTTTTGAAGAAATTATCCACGAAGGTA
AATGAACTTCTTGGATTGAGACTACTTGCAATGACAAGAGAGCTTGCCCACAGCTCAGAA
GTCTAG

Peptide Sequence

PEP ID

XP_016486902.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 isoform X2 [Nicotiana tabacum]
Sequence

MSAAVLPKHVAAVLKCQKNPLRALEIFNSVKKEDGFNHNLSTYKCMVEKLGCYGEFKEME
GVIEEARQKIDNMLLEGVYITAIRSYGKKGKVQEAVDVFEKMDFFNCQPSVHSYNTIMNV
LVEHGFFKQAHKVYMRMLEKGISPDVYTFTIRIKSFCRTNRPHVALRLLNNMPDQGCEFN
AVAYCTVIGGFYEVNCRVEACELFDEMLRLGITPDVTTFNKLICTLCKKGDVQESERLLN
KIMKRGVFPNLFTCNVLIQGLSERGQLNEAARMLGTLNKEGLNADVVTYNTLICGLCKHS
KVAEAESYLHKMVNGGFEPDAFTYNTIIGAYCKLGMIQKADRILNYAVFKGFVPDEFTLC
SLIYGLCQDGDFNRAKSLFNEATGKGMQCNVILYNTLIKGMCRQGLILEALKLMTEMPEK
GCRPDTWTYNLIINGLCKMGCVSDASNILNVAVAKGTLPDIFTFNTLIDGYCKQSKLADA
IEILNTMWDHDVVPDVITYNTMLDGLCKLKTSDDVMETFKVMVEKGCVPNIITYNILIES
LCKSRKFMKALDLLEDIQSKGLIPDTVTFGTLINGFCENEDLEGAYELFRRMKTQYNCTH
TTATYNILISAFAKKLKMDIAEKLFLEMSECGCSPDNYTYRCMIDGFCKVDNSELGYKFL
LDNMAKEFLPSKETAGRVINCLCVKNRLLEAVGIIHLMVQKGVVPDVVHTIFEADKKDVA
APKIVVEDLLKKDHITYYAYELLYDGIRDKKLLKKLSTKVNELLGLRLLAMTRELAHSSE
V

Transcript Sequence

Gene sequence data has not been registered.